Human Immunodeficiency Virus (HIV) is a virus that causes Acquired Immunodeficiency Virus (AIDS) which is still considered a global burden. Japan has not yet been successful in fulfilling the UNAIDS/WHO (90/90/90) target due to the lack of HIV surveillance in the country. HIV is known as a virus with a very high genetic diversity in which the presence of insertions or deletions (indels) and sin…