Genome Wide Association Studies (GWAS) aims to find genomic variants that correlates with the occurrence of certain traits within a population. Various tools and algorithms can be utilized to conduct GWAS, among them are PLINK, Hail, and VariantSpark. In this study, a GWAS analysis pipeline was developed using PLINK, Hail, and VariantSpark to assess their performance in conduction GWAS asso…